NO you don't need the gearbox mounting pins a couple of long bolts with the heads sawn off will od the trick nicely, though to be honest I didn't even use them I just slipped it on.
CLutch is easy peasy lemon squeezy to replace once you've split the bike, your problem is going to come with the exhuast bolts I'd bet

I'd order all new fittings for the complete exhaust before starting, it'll just make your life so much easier..
The swing arm/ bevel bearings are loctited in and need a bit of heat, I split the bevel box a couple of weeks ago to regrease the drive shaft splines. Trust me, buy a BFO breaker bar and it'll come out first time ( ask me how I know this one

) the swing arm bearings came out okay when I replaced my clutch at Christmas, but the Bevel Box needed the BFO breaker bar to shift them.
AFAIK the actual shaft itself is 1 piece, but obvisouly you have the split for the CV joint ( I do stand to be corrected here ) and then the splined mounting collar for the gearbox output shaft, so I guess that makes it 2 piece.
Definately replace the friction & pressure plate, personally I'd inspect the rest and if needed replace them, but they're probably going to be okay. DO however use new bolts for the housing and cover as these stretch when tourqed correctly and as such should not be re-used !!!
Take your time, be thorough and you'll be fine, have fun.
******* Do make sure that the snap ring has fully engaged locking the drive shaft to the gearbox output shaft ( rubber mallet to seat it )**********
Give it a damn good pull to make sure that you have it locked in place
******* Also coat the gearbox output shaft splines with grease NOT the drive shaft splines as it'll then make an air seal and it'll be bloody hard to get the shaft on and the ring seated
Good luck